Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015915459.1_cds_XP_016465258.1_58227
CDS Infomation

[gene=LOC107788114] [db_xref=GeneID:107788114] [protein=chlorophyllide a oxygenase, chloroplastic-like] [protein_id=XP_016465258.1] [location=join(18208..18279,18883..19119,19509..19613,19823..20098,20296..20443,20542..20726,20829..20941,21107..21401,21850..22014)] [gbkey=CDS]
Sequence

ATGACAGCCATTACTACTGCTCTTTCTTTTCCTTTCTCTTTGTGCCGCTCTACTAAGTCT
TATACTAGAAAGTATGTCAAAGGGAGCTTTGGAGTGTTTGCAGTATATGGGGAGGAGGGT
GGGATGCCAGATAAGAAAAGTTCCTGGTTGACACTCTTTAATGTGGAAGATCCAAGGTCT
AAAGTTCCACAAATTAAAGGCAAATTCTTGGATGCAAATCAAGCTTTGGAAGTTGCTAGA
TATGATCTACAATACTGTGATTGGCGAGCTCGGCAAGATGTACTTACAATCATGCTGCTG
CATGAAAAGGTTGTGGAAGTGTTGAACCCTCTAGCACGTGAATACAAATCTATTGGAACC
ATGAAAAAGGAACTTGCAGAGTTGCAAGGAGAGCTTTCTCAGGCCCACAACCAGGTACAT
ATATCTGAGGCCCGGGTTTCTGCTGCTTTGGATAAGCTAGCTTACATGGAAGAGTTGGTT
AATGATAGGCTTCTGCAAGAGAGAAGCACGGCAGAATCAGATTGCTCGTCCTCCTCTGCC
AGTACGTCAACAGCATTATTGGATACTGTTAAAAGCAAGCAACCCCGAAGAACCCTGAGT
GTGTCAGGTCCTGTCCAAGATTACAGTTCCCGTTTGAAGAACTTTTGGTACCCTGTTGCT
TTCTCCGCAGATCTTAAGGATGACACCATGTTACCGATTGATTGCTTTGAGCAACCATGG
GTGATCTTTCGCGGGAATGATGGAAAACCTGGATGTGTACAGAATACGTGTGCACATAGA
GCCTGCCCCCTTGATCTTGGCTCAGTGAAAGAGGGACGCATTCAGTGCCCTTATCACGGA
TGGGAATACTCAACTGATGGGAAGTGTGAGAAAATGCCATCAACACGATTACTGAATGTA
AAGATCAAAGCACTGCCCTGCTTTGAGCAAGAGGGAATGATATGGATTTGGCCAGGAAAT
GATCCCCCTGCAGCTACCCTTCCTTCTTTACTACCGCCTTCTGGATTTCAAATCCATGCG
GAGATAGTCATGGAACTTCCAGTGGAACATGGGCTATTATTAGACAATTTATTGGATCTT
GCACATGCTCCTTTCACCCATACATCAACCTTTGCTAAAGGATGGAGTGTCCCAAGATTG
GTGAAGTTTTTGACTCCTGCTTCTGGTCTGCAAGGATATTGGGATCCTTATCCAATAGAT
ATGGAATTTAGACCACCTTGTATGGTTTTATCAACCATTGGAATCTCAAAGCCAGGCAAA
TTGGAGGGGCAGAGTACCAAGCAGTGTTGTACACACCTTCATCAACTTCATGTTTGCTTA
CCTGCATCACGACACAAGACACGGTTATTATATAGGATGTCACTGGATTTTGCTCCCCTG
CTGAAACACATCCCTTTCATGCAATATGTTTGGAGACATTTTGCCGAACAGGTTTTAAAT
GAAGACCTACGGCTTGTGTTGGGCCAGCAGGATCGCATGCTCAATGGCGCCAATATTTGG
AACTTGCCAGTGTCTTACGATAAGCTAGGTGTGAGGTATAGAATATGGAGAGATGCTGTA
GATAGTGGAGCAAAGCATCTACCATTCAGCAAATAA

Peptide Sequence

PEP ID

XP_016465258.1
PEP Infomation

PREDICTED: chlorophyllide a oxygenase, chloroplastic-like [Nicotiana tabacum]
Sequence

MTAITTALSFPFSLCRSTKSYTRKYVKGSFGVFAVYGEEGGMPDKKSSWLTLFNVEDPRS
KVPQIKGKFLDANQALEVARYDLQYCDWRARQDVLTIMLLHEKVVEVLNPLAREYKSIGT
MKKELAELQGELSQAHNQVHISEARVSAALDKLAYMEELVNDRLLQERSTAESDCSSSSA
STSTALLDTVKSKQPRRTLSVSGPVQDYSSRLKNFWYPVAFSADLKDDTMLPIDCFEQPW
VIFRGNDGKPGCVQNTCAHRACPLDLGSVKEGRIQCPYHGWEYSTDGKCEKMPSTRLLNV
KIKALPCFEQEGMIWIWPGNDPPAATLPSLLPPSGFQIHAEIVMELPVEHGLLLDNLLDL
AHAPFTHTSTFAKGWSVPRLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGK
LEGQSTKQCCTHLHQLHVCLPASRHKTRLLYRMSLDFAPLLKHIPFMQYVWRHFAEQVLN
EDLRLVLGQQDRMLNGANIWNLPVSYDKLGVRYRIWRDAVDSGAKHLPFSK

Transcript Sequence

Gene sequence data has not been registered.